Publications

Book Chapters     Journals     Conferences

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Book Chapters

  • Automatic Image Analysis Pipeline for Studying Growth in Arabidopsis.
    K. Mkrtchyan, A. Chakraborty, M. Liu, A. Roy-Chowdhury, Video Bioinformatics, Springer International Publishing, 2015.
    [Chapter]   [Cite]
  • Computational Tools For Quantitative Analysis of Cell Growth Patterns And Morphogenesis in Actively Developing Plant Stem Cell Niches.
    A. Chakraborty, R. Yadav, M. Liu, M. Tataw, K. Mkrtchyan, A.K. Roy Chowdhury, G. V. Reddy, Plant Signalling Networks: Methods and Protocols, Springer Protocols 2012.
    [Chapter]   [Cite]

Journals

  • Person Re-identification Using Multiple Egocentric Views.
    A. Chakraborty, B. Mandal, J. Yuan, IEEE Transactions on Circuits and Systems for Video Technology, 2017.
    [Paper]   [Supplementary]
  • Optimal Landmark Selection for Registration of 4D Confocal Image Stacks in Arabidopsis.
    K. Mkrtchyan, A. Chakraborty, A. K. Roy-Chowdhury, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017.
    [Paper]   [Cite]
  • Network Consistent Data Association.
    A. Chakraborty, A. Das, A. K. Roy-Chowdhury, IEEE Transactions on Pattern Analysis and Machine Intelligence, 2016.
    [Paper]   [Supplementary]   [Cite]   [Code]
  • A Context-Aware Delayed Agglomeration Framework for Electron Microscopy Segmentation.
    T. Parag, A. Chakraborty, S. Plaza, L. Scheffer, PLoS ONE, 2015.
    [Paper]   [Cite]
  • Context Aware Spatio-temporal Cell Tracking In Densely Packed Multilayer Tissues.
    A. Chakraborty, A. K. Roy-Chowdhury, Medical Image Analysis, 2015.
    [Paper]   [Supplementary]   [Cite]   [Code]
  • Graph-based Active Learning of Agglomeration (GALA): a Python library to segment 2D and 3D neuroimages.
    J. Nunez-Iglesias, R. Kennedy, S. M. Plaza, A. Chakraborty, W. T. Katz, Frontiers in Neuroinformatics, 2014.
    [Paper]   [Cite]   [Code]
  • Adaptive Geometric Tessellation for 3D Reconstruction of Anisotropically Developing Cells in Multilayer Tissues from Sparse Volumetric Microscopy Images.
    A. Chakraborty, M. M. Perales, G. V. Reddy, A. K. Roy-Chowdhury, PLoS ONE, 2013.
    [Paper]   [Supplementary]   [Cite]   [Code]
  • Adaptive Cell Segmentation and Tracking for Volumetric Confocal Microscopy Images of A Developing Plant Meristem.
    M. Liu*, A. Chakraborty*, D. Singh, M. Gopi, R. Yadav, G.V. Reddy, A. K. Roy-Chowdhury, Molecular Plant, 2011 (*Jointly first-authored).
    [Paper]   [Cite]

Conferences

  • A Poisson Process Model for Activity Forecasting.
    T. Mahmud, M. Hasan, A. Chakraborty, A. K. Roy-Chowdhury, International Conference on Image Processing (ICIP), 2016.
    [Paper]   [Cite]
  • Person Re-identification Using Multiple First-Person-Views on Wearable Devices.
    A. Chakraborty, B. Mandal, H. K. Galoogahi, Winter Conference on Applications of Computer Vision (WACV), 2016.
    [Paper]   [Supplementary]   [Cite]
  • Context-Aware Activity Forecasting.
    A. Chakraborty, A. K. Roy-Chowdhury, Asian Conference on Computer Vision (ACCV).
    [Paper]   [Cite]
  • Consistent Re-identification in a Camera Network.
    A. Das*, A. Chakraborty*, A. K. Roy-Chowdhury, European Conference on Computer Vision (ECCV), 2014 (*Jointly first-authored).
    [Paper]   [Supplementary]   [Cite]   [Code]
  • A Conditional Random Field Model For Tracking In Densely Packed Cell Structures.
    A. Chakraborty, A. K. Roy-Chowdhury, IEEE International Conference on Image Processing (ICIP), 2014.
    [Paper]   [Cite]
  • Automated registration of live imaging stacks of Arabidopsis.
    K. Mkrtchyan, A. Chakraborty, A. K. Roy-Chowdhury, International Symposium on Biomedical Imaging (ISBI), 2013.
    [Paper]   [Cite]
  • Cell Resolution 3D Reconstruction of Developing Multilayer Tissues from Sparsely Sampled Volumetric Microscopy Images.
    A. Chakraborty, R. Yadav, G. V. Reddy, A. K. Roy-Chowdhury, International Conference on Bioinformatics and Biomedicine (BIBM), 2011.
    [Paper]   [Cite]
  • Cell Volume Estimation From A Sparse Collection of Noisy Confocal Image Slices.
    A. Chakraborty, M. Liu, K. Mkrtchyan, G. V. Reddy, A. K. Roy-Chowdhury, Indian Conference on Computer Vision, Graphics and Image Processing (ICVGIP), 2010.
    [Paper]   [Cite]